PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000056.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 180aa    MW: 19260 Da    PI: 8.5275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000056.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00155274123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ F++   L  H  +H
  Itr_sc000056.1_g00012.1 52 FECKTCNRQFPSFQALGGHRASH 74
                             89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-850119No hitNo description
PfamPF139124.5E-135176IPR007087Zinc finger, C2H2
SMARTSM003550.165274IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139122.7E-1096121IPR007087Zinc finger, C2H2
SMARTSM003550.2897119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.09997119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVNMNLPMKR GREFDSITAA MANCLMLLSR QHAAAAAGDF SPAPAVAGGR VFECKTCNRQ  60
FPSFQALGGH RASHKRPRLM GDLSLQPPAS PPKPKTHECS ICGVEFALGQ ALGGHMRRHR  120
AVMNNNNESH SSGHGDAPAA AESGGRRALC LDLNLTPLEN DLEFTFGKVA AHHHVVDCSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593204.14e-66PREDICTED: zinc finger protein ZAT11-like
TrEMBLO220866e-67O22086_PETHY; ZPT2-14
STRINGPOPTR_0010s21650.13e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.18e-41C2H2 family protein